One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.132215_kYqbpC/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.132215_kYqbpC/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m1_shift9 ; 26 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_5-8nt_m1_shift9 (oligos_5-8nt_m1)                         
; oligos_5-8nt_m1; m=0 (reference); ncol1=10; shift=9; ncol=19; ---------myACGCGTrk
; Alignment reference
a	0	0	0	0	0	0	0	0	0	23	18	56	0	9	5	2	0	24	17
c	0	0	0	0	0	0	0	0	0	27	21	11	73	0	60	0	8	14	10
g	0	0	0	0	0	0	0	0	0	10	13	8	0	62	0	72	11	20	27
t	0	0	0	0	0	0	0	0	0	15	23	0	2	4	10	1	56	17	21
CAMTA1_MA1197.1_JASPAR_shift8 (CAMTA1:MA1197.1:JASPAR) 0.847 0.706 5.692 0.920 0.936 7 3 2 7 7 5.200 2 
; oligos_5-8nt_m1 versus CAMTA1_MA1197.1_JASPAR (CAMTA1:MA1197.1:JASPAR); m=2/25; ncol2=12; w=10; offset=-1; strand=D; shift=8; score=    5.2; --------aAarCGCGTkd
; cor=0.847; Ncor=0.706; logoDP=5.692; NsEucl=0.920; NSW=0.936; rcor=7; rNcor=3; rlogoDP=2; rNsEucl=7; rNSW=7; rank_mean=5.200; match_rank=2
a	0	0	0	0	0	0	0	0	301	430	405	172	0	0	0	0	0	63	235
c	0	0	0	0	0	0	0	0	56	46	6	140	598	0	578	0	0	58	33
g	0	0	0	0	0	0	0	0	117	45	132	285	0	598	0	598	3	326	156
t	0	0	0	0	0	0	0	0	124	77	55	1	0	0	20	0	595	151	174
ABF1_M0257_1.02_CISBP_rc_shift8 (ABF1:M0257_1.02:CISBP_rc) 0.758 0.690 0.247 0.916 0.929 8 4 25 8 8 10.600 8 
; oligos_5-8nt_m1 versus ABF1_M0257_1.02_CISBP_rc (ABF1:M0257_1.02:CISBP_rc); m=8/25; ncol2=11; w=10; offset=-1; strand=R; shift=8; score=   10.6; --------vmCACGTGThc
; cor=0.758; Ncor=0.690; logoDP=0.247; NsEucl=0.916; NSW=0.929; rcor=8; rNcor=4; rlogoDP=25; rNsEucl=8; rNSW=8; rank_mean=10.600; match_rank=8
a	0	0	0	0	0	0	0	0	26	25	13	90	0	9	9	9	7	25	21
c	0	0	0	0	0	0	0	0	28	40	71	0	82	0	10	0	7	33	37
g	0	0	0	0	0	0	0	0	28	19	4	10	0	91	8	75	18	16	21
t	0	0	0	0	0	0	0	0	18	16	12	0	18	0	73	16	68	26	21
ABI5_M0261_1.02_CISBP_rc_shift9 (ABI5:M0261_1.02:CISBP_rc) 0.715 0.715 4.663 0.895 0.890 17 1 9 13 14 10.800 9 
; oligos_5-8nt_m1 versus ABI5_M0261_1.02_CISBP_rc (ABI5:M0261_1.02:CISBP_rc); m=9/25; ncol2=10; w=10; offset=0; strand=R; shift=9; score=   10.8; ---------mCACGTGkcv
; cor=0.715; Ncor=0.715; logoDP=4.663; NsEucl=0.895; NSW=0.890; rcor=17; rNcor=1; rlogoDP=9; rNsEucl=13; rNSW=14; rank_mean=10.800; match_rank=9
a	0	0	0	0	0	0	0	0	0	34	7	100	0	0	0	0	8	17	31
c	0	0	0	0	0	0	0	0	0	34	71	0	100	0	0	8	0	65	25
g	0	0	0	0	0	0	0	0	0	16	7	0	0	100	0	92	31	9	26
t	0	0	0	0	0	0	0	0	0	16	15	0	0	0	100	0	61	9	18
ABI5_MA0931.1_JASPAR_rc_shift9 (ABI5:MA0931.1:JASPAR_rc) 0.714 0.714 4.671 0.895 0.890 18 2 8 14 15 11.400 11 
; oligos_5-8nt_m1 versus ABI5_MA0931.1_JASPAR_rc (ABI5:MA0931.1:JASPAR_rc); m=11/25; ncol2=10; w=10; offset=0; strand=R; shift=9; score=   11.4; ---------mCACGTGkcv
; cor=0.714; Ncor=0.714; logoDP=4.671; NsEucl=0.895; NSW=0.890; rcor=18; rNcor=2; rlogoDP=8; rNsEucl=14; rNSW=15; rank_mean=11.400; match_rank=11
a	0	0	0	0	0	0	0	0	0	336	70	999	0	0	0	0	78	167	306
c	0	0	0	0	0	0	0	0	0	337	709	0	999	0	0	78	0	660	257
g	0	0	0	0	0	0	0	0	0	164	70	0	0	999	0	922	314	87	257
t	0	0	0	0	0	0	0	0	0	164	152	0	0	0	999	0	608	87	181